ISDA

Deposition Date 2014-11-14

Release Date 2014-12-24

Last Version Date 2024-05-08

Entry Detail

PDB ID:

4D6S

Keywords:

TRANSCRIPTION

Title:

crystal structure of human JMJD2D in complex with N-OXALYLGLYCINE and bound 5,6-Dimethylbenzimidazole

Biological Source:

Source Organism:

HOMO SAPIENS (Taxon ID: 9606)

Host Organism:

ESCHERICHIA COLI

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.40 Å

R-Value Free:

0.16

R-Value Work:

0.13

R-Value Observed:

0.14

Space Group:

P 43 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:LYSINE-SPECIFIC DEMETHYLASE 4D
Gene (Uniprot):KDM4D
Chain IDs:A
Chain Length:343
Number of Molecules:1
Biological Source:HOMO SAPIENS

UniProt ID:Q6B0I6 Pfam ID:PF02375, PF02373 EC:1.14.11.27

Ligand Molecules

DMD

DMS

EDO

OGA

SO4

Primary Citation

Crystal Structure of Human Jmjd2D in Complex with N-Oxalylglycine and Bound 5,6- Dimethylbenzimidazole

Krojer, T, Vollmar, M, Bradley, A, Crawley, L, Szykowska, A, Burgess-Brown, N, Gileadi, C, Johansson, C, Oppermann, U, Bountra, C, Arrowsmith, C.H, Edwards, A, von Delft, F.Show

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Primary Citation of related structures