4D3S image
Deposition Date 2014-10-23
Release Date 2015-04-01
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4D3S
Keywords:
Title:
Imine reductase from Nocardiopsis halophila
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.24 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:IMINE REDUCTASE
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:293
Number of Molecules:8
Biological Source:NOCARDIOPSIS HALOPHILA
Ligand Molecules
Primary Citation
Structure, Activity and Stereoselectivity of Nadph-Dependent Oxidoreductases Catalysing the S-Selective Reduction of the Imine Substrate 2-Methylpyrroline.
Chembiochem 16 1052 ? (2015)
PMID: 25809902 DOI: 10.1002/CBIC.201402625

Abstact

Oxidoreductases from Streptomyces sp. GF3546 [3546-IRED], Bacillus cereus BAG3X2 (BcIRED) and Nocardiopsis halophila (NhIRED) each reduce prochiral 2-methylpyrroline (2MPN) to (S)-2-methylpyrrolidine with >95 % ee and also a number of other imine substrates with good selectivity. Structures of BcIRED and NhIRED have helped to identify conserved active site residues within this subgroup of imine reductases that have S selectivity towards 2MPN, including a tyrosine residue that has a possible role in catalysis and superimposes with an aspartate in related enzymes that display R selectivity towards the same substrate. Mutation of this tyrosine residue-Tyr169-in 3546-IRED to Phe resulted in a mutant of negligible activity. The data together provide structural evidence for the location and significance of the Tyr residue in this group of imine reductases, and permit a comparison of the active sites of enzymes that reduce 2MPN with either R or S selectivity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures