4D26 image
Deposition Date 2014-05-07
Release Date 2014-06-18
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4D26
Keywords:
Title:
Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA,ADP and Pi
Biological Source:
Source Organism:
BOMBYX MORI (Taxon ID: 7091)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:BMVLG PROTEIN
Gene (Uniprot):BmVLG
Mutations:YES
Chain IDs:A
Chain Length:434
Number of Molecules:1
Biological Source:BOMBYX MORI
Polymer Type:polyribonucleotide
Molecule:5'-R(*UP*GP*AP*CP*AP*UP)-3'
Chain IDs:B (auth: D)
Chain Length:6
Number of Molecules:1
Biological Source:BOMBYX MORI
Primary Citation
RNA Clamping by Vasa Assembles a Pirna Amplifier Complex on Transposon Transcripts.
Cell(Cambridge,Mass.) 157 1698 ? (2014)
PMID: 24910301 DOI: 10.1016/J.CELL.2014.05.018

Abstact

Germline-specific Piwi-interacting RNAs (piRNAs) protect animal genomes against transposons and are essential for fertility. piRNAs targeting active transposons are amplified by the ping-pong cycle, which couples Piwi endonucleolytic slicing of target RNAs to biogenesis of new piRNAs. Here, we describe the identification of a transient Amplifier complex that mediates biogenesis of secondary piRNAs in insect cells. Amplifier is nucleated by the DEAD box RNA helicase Vasa and contains the two Piwi proteins participating in the ping-pong loop, the Tudor protein Qin/Kumo and antisense piRNA guides. These components assemble on the surface of Vasa's helicase domain, which functions as an RNA clamp to anchor Amplifier onto transposon transcripts. We show that ATP-dependent RNP remodeling by Vasa facilitates transfer of 5' sliced piRNA precursors between ping-pong partners, and loss of this activity causes sterility in Drosophila. Our results reveal the molecular basis for the small RNA amplification that confers adaptive immunity against transposons.

Legend

Protein

Chemical

Disease

Primary Citation of related structures