4CZ2 image
Deposition Date 2014-04-16
Release Date 2014-06-04
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4CZ2
Title:
Complex of human VARP-ANKRD1 with Rab32-GppCp. Selenomet derivative.
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.97 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RAS-RELATED PROTEIN RAB-32
Gene (Uniprot):RAB32
Chain IDs:A, B, C
Chain Length:230
Number of Molecules:3
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27
Gene (Uniprot):ANKRD27
Mutagens:YES
Chain IDs:D, E, F
Chain Length:203
Number of Molecules:3
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Varp is Recruited on to Endosomes by Direct Interaction with Retromer, Where Together They Function in Export to the Cell Surface.
Dev.Cell 29 591 ? (2014)
PMID: 24856514 DOI: 10.1016/J.DEVCEL.2014.04.010

Abstact

VARP is a Rab32/38 effector that also binds to the endosomal/lysosomal R-SNARE VAMP7. VARP binding regulates VAMP7 participation in SNARE complex formation and can therefore influence VAMP7-mediated membrane fusion events. Mutant versions of VARP that cannot bind Rab32:GTP, designed on the basis of the VARP ankyrin repeat/Rab32:GTP complex structure described here, unexpectedly retain endosomal localization, showing that VARP recruitment is not dependent on Rab32 binding. We show that recruitment of VARP to the endosomal membrane is mediated by its direct interaction with VPS29, a subunit of the retromer complex, which is involved in trafficking from endosomes to the TGN and the cell surface. Transport of GLUT1 from endosomes to the cell surface requires VARP, VPS29, and VAMP7 and depends on the direct interaction between VPS29 and VARP. Finally, we propose that endocytic cycling of VAMP7 depends on its interaction with VARP and, consequently, also on retromer.

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Disease

Primary Citation of related structures
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