4CXG image
Entry Detail
PDB ID:
4CXG
Keywords:
Title:
Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Biological Source:
PDB Version:
Deposition Date:
2014-04-07
Release Date:
2014-07-16
Method Details:
Experimental Method:
Resolution:
8.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:18S RRNA - H44
Chain IDs:A (auth: 1)
Chain Length:135
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polyribonucleotide
Description:28S RRNA - H89
Chain IDs:B (auth: 2)
Chain Length:50
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Description:ELONGATION FACTOR 1A
Chain IDs:C (auth: A)
Chain Length:437
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Description:40S RIBOSOMAL PROTEIN US12
Chain IDs:D (auth: X)
Chain Length:143
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polyribonucleotide
Description:TRANSFER RNA
Chain IDs:E (auth: Y)
Chain Length:76
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polyribonucleotide
Description:18S RRNA - H5-H14
Chain IDs:F (auth: a)
Chain Length:437
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polyribonucleotide
Description:18S RRNA - H8
Chain IDs:G (auth: b)
Chain Length:17
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polyribonucleotide
Description:28S RRNA - H95
Chain IDs:H (auth: c)
Chain Length:19
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polyribonucleotide
Description:MESSENGER RNA
Chain IDs:I (auth: x)
Chain Length:143
Number of Molecules:1
Biological Source:ESCHERICHIA COLI
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
1MA E A ?
2MG E G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
5MC E C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE
5MU E U 5-METHYLURIDINE 5'-MONOPHOSPHATE
7MG E G ?
H2U E U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
M2G E G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
MIA E A ?
OMC E C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
PSU E U PSEUDOURIDINE-5'-MONOPHOSPHATE
Ligand Molecules
Primary Citation
Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement.
Cell(Cambridge,Mass.) 158 121 ? (2014)
PMID: 24995983 DOI: 10.1016/J.CELL.2014.04.044

Abstact

The extent to which bacterial ribosomes and the significantly larger eukaryotic ribosomes share the same mechanisms of ribosomal elongation is unknown. Here, we present subnanometer resolution cryoelectron microscopy maps of the mammalian 80S ribosome in the posttranslocational state and in complex with the eukaryotic eEF1A⋅Val-tRNA⋅GMPPNP ternary complex, revealing significant differences in the elongation mechanism between bacteria and mammals. Surprisingly, and in contrast to bacterial ribosomes, a rotation of the small subunit around its long axis and orthogonal to the well-known intersubunit rotation distinguishes the posttranslocational state from the classical pretranslocational state ribosome. We term this motion "subunit rolling." Correspondingly, a mammalian decoding complex visualized in substates before and after codon recognition reveals structural distinctions from the bacterial system. These findings suggest how codon recognition leads to GTPase activation in the mammalian system and demonstrate that in mammalia subunit rolling occurs during tRNA selection.

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Primary Citation of related structures