4CQK image
Deposition Date 2014-02-17
Release Date 2014-04-16
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4CQK
Keywords:
Title:
Crystal structure of ligand-bound NaD1
Biological Source:
Source Organism:
NICOTIANA ALATA (Taxon ID: 4087)
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:FLOWER-SPECIFIC DEFENSIN
Gene (Uniprot):D1
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N
Chain Length:47
Number of Molecules:14
Biological Source:NICOTIANA ALATA
Primary Citation
Phosphoinositide-Mediated Oligomerization of a Defensin Induces Cell Lysis.
Elife 3 1808 ? (2014)
PMID: 24692446 DOI: 10.7554/ELIFE.01808

Abstact

Cationic antimicrobial peptides (CAPs) such as defensins are ubiquitously found innate immune molecules that often exhibit broad activity against microbial pathogens and mammalian tumor cells. Many CAPs act at the plasma membrane of cells leading to membrane destabilization and permeabilization. In this study, we describe a novel cell lysis mechanism for fungal and tumor cells by the plant defensin NaD1 that acts via direct binding to the plasma membrane phospholipid phosphatidylinositol 4,5-bisphosphate (PIP2). We determined the crystal structure of a NaD1:PIP2 complex, revealing a striking oligomeric arrangement comprising seven dimers of NaD1 that cooperatively bind the anionic headgroups of 14 PIP2 molecules through a unique 'cationic grip' configuration. Site-directed mutagenesis of NaD1 confirms that PIP2-mediated oligomerization is important for fungal and tumor cell permeabilization. These observations identify an innate recognition system by NaD1 for direct binding of PIP2 that permeabilizes cells via a novel membrane disrupting mechanism. DOI: http://dx.doi.org/10.7554/eLife.01808.001.

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