4CNE image
Deposition Date 2014-01-22
Release Date 2014-07-02
Last Version Date 2025-12-10
Entry Detail
PDB ID:
4CNE
Keywords:
Title:
Crystal structure of E.coli TrmJ in complex with S-adenosyl-L- homocysteine
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TRNA (CYTIDINE/URIDINE-2'-O-)-METHYLTRANSFERASE TRMJ
Gene (Uniprot):trmJ
Mutagens:YES
Chain IDs:A, B
Chain Length:267
Number of Molecules:2
Biological Source:ESCHERICHIA COLI
Primary Citation
Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates.
RNA 20 1257 ? (2014)
PMID: 24951554 DOI: 10.1261/RNA.044503.114

Abstact

The 2'-O-methylation of the nucleoside at position 32 of tRNA is found in organisms belonging to the three domains of life. Unrelated enzymes catalyzing this modification in Bacteria (TrmJ) and Eukarya (Trm7) have already been identified, but until now, no information is available for the archaeal enzyme. In this work we have identified the methyltransferase of the archaeon Sulfolobus acidocaldarius responsible for the 2'-O-methylation at position 32. This enzyme is a homolog of the bacterial TrmJ. Remarkably, both enzymes have different specificities for the nature of the nucleoside at position 32. While the four canonical nucleosides are substrates of the Escherichia coli enzyme, the archaeal TrmJ can only methylate the ribose of a cytidine. Moreover, the two enzymes recognize their tRNA substrates in a different way. We have solved the crystal structure of the catalytic domain of both enzymes to gain better understanding of these differences at a molecular level.

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Primary Citation of related structures
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