4CKV image
Deposition Date 2014-01-09
Release Date 2015-01-28
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4CKV
Keywords:
Title:
Crystal structure of VEGFR-1 domain 2 in presence of Zn
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.06 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1
Gene (Uniprot):FLT1
Chain IDs:A (auth: X)
Chain Length:94
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Biophysical Studies of the Induced Dimerization of Human Vegf R Receptor 1 Binding Domain by Divalent Metals Competing with Vegf-A
Plos One 11 67755 ? (2016)
PMID: 27942001 DOI: 10.1371/JOURNAL.PONE.0167755

Abstact

Angiogenesis is tightly regulated through the binding of vascular endothelial growth factors (VEGFs) to their receptors (VEGFRs). In this context, we showed that human VEGFR1 domain 2 crystallizes in the presence of Zn2+, Co2+ or Cu2+ as a dimer that forms via metal-ion interactions and interlocked hydrophobic surfaces. SAXS, NMR and size exclusion chromatography analyses confirm the formation of this dimer in solution in the presence of Co2+, Cd2+ or Cu2+. Since the metal-induced dimerization masks the VEGFs binding surface, we investigated the ability of metal ions to displace the VEGF-A binding to hVEGFR1: using a competition assay, we evidenced that the metals displaced the VEGF-A binding to hVEGFR1 extracellular domain binding at micromolar level.

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