4CDY image
Deposition Date 2013-11-07
Release Date 2014-05-21
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4CDY
Title:
Spectroscopically-validated structure of cytochrome c prime from Alcaligenes xylosoxidans, reduced by X-ray irradiation at 160K
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.77 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C'
Chain IDs:A
Chain Length:127
Number of Molecules:1
Biological Source:ACHROMOBACTER XYLOSOXIDANS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLU PYROGLUTAMIC ACID
Ligand Molecules
Primary Citation
Fingerprinting Redox and Ligand States in Haemprotein Crystal Structures Using Resonance Raman Spectroscopy.
Acta Crystallogr.,Sect.D 70 1289 ? (2014)
PMID: 24816098 DOI: 10.1107/S1399004714004039

Abstact

It is crucial to assign the correct redox and ligand states to crystal structures of proteins with an active redox centre to gain valid functional information and prevent the misinterpretation of structures. Single-crystal spectroscopies, particularly when applied in situ at macromolecular crystallography beamlines, allow spectroscopic investigations of redox and ligand states and the identification of reaction intermediates in protein crystals during the collection of structural data. Single-crystal resonance Raman spectroscopy was carried out in combination with macromolecular crystallography on Swiss Light Source beamline X10SA using cytochrome c' from Alcaligenes xylosoxidans. This allowed the fingerprinting and validation of different redox and ligand states, identification of vibrational modes and identification of intermediates together with monitoring of radiation-induced changes. This combined approach provides a powerful tool to obtain complementary data and correctly assign the true oxidation and ligand state(s) in redox-protein crystals.

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Primary Citation of related structures
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