4CDF image
Deposition Date 2013-10-31
Release Date 2014-03-19
Last Version Date 2024-10-23
Entry Detail
PDB ID:
4CDF
Keywords:
HYDROLASE
Title:
Human DPP1 in complex with (2S,4S)-N-((1S)-1-cyano-2-(4-(4- cyanophenyl)phenyl)ethyl)-4-hydroxy-piperidine-2-carboxamide
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
SPODOPTERA FRUGIPERDA
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 31 2 1
4CDF validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN
Gene (Uniprot):CTSC
Chain IDs:A, D
Chain Length:120
Number of Molecules:2
Biological Source:HOMO SAPIENS
UniProt ID:P53634 Pfam ID:PF08773, PF00112 EC:3.4.14.1
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN
Gene (Uniprot):CTSC
Chain IDs:B, E
Chain Length:166
Number of Molecules:2
Biological Source:HOMO SAPIENS
UniProt ID:P53634 Pfam ID:PF08773, PF00112 EC:3.4.14.1
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN
Gene (Uniprot):CTSC
Chain IDs:C, F
Chain Length:69
Number of Molecules:2
Biological Source:HOMO SAPIENS
UniProt ID:P53634 Pfam ID:PF08773, PF00112 EC:3.4.14.1
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
CL
NAG
W2C
Primary Citation
Cathepsin C Inhibitors: Property Optimization and Identification of a Clinical Candidate.
J.Med.Chem. 57 2357 ? (2014)
PMID: 24592859 DOI: 10.1021/JM401705G

Abstact

A lead generation and optimization program delivered the highly selective and potent CatC inhibitor 10 as an in vivo tool compound and potential development candidate. Structural studies were undertaken to generate SAR understanding.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
4CDC
4CDD
4CDE