4CC9 image
Deposition Date 2013-10-19
Release Date 2013-12-11
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4CC9
Keywords:
Title:
Crystal structure of human SAMHD1 (amino acid residues 582-626) bound to Vpx isolated from sooty mangabey and human DCAF1 (amino acid residues 1058-1396)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.47 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN VPRBP
Gene (Uniprot):DCAF1
Chain IDs:A
Chain Length:361
Number of Molecules:1
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN VPX
Gene (Uniprot):vpx
Chain IDs:B
Chain Length:119
Number of Molecules:1
Biological Source:SIMIAN IMMUNODEFICIENCY VIRUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1
Gene (Uniprot):SAMHD1
Chain IDs:C
Chain Length:71
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Structural Basis of Lentiviral Subversion of a Cellular Protein Degradation Pathway.
Nature 505 234 ? (2014)
PMID: 24336198 DOI: 10.1038/NATURE12815

Abstact

Lentiviruses contain accessory genes that have evolved to counteract the effects of host cellular defence proteins that inhibit productive infection. One such restriction factor, SAMHD1, inhibits human immunodeficiency virus (HIV)-1 infection of myeloid-lineage cells as well as resting CD4(+) T cells by reducing the cellular deoxynucleoside 5'-triphosphate (dNTP) concentration to a level at which the viral reverse transcriptase cannot function. In other lentiviruses, including HIV-2 and related simian immunodeficiency viruses (SIVs), SAMHD1 restriction is overcome by the action of viral accessory protein x (Vpx) or the related viral protein r (Vpr) that target and recruit SAMHD1 for proteasomal degradation. The molecular mechanism by which these viral proteins are able to usurp the host cell's ubiquitination machinery to destroy the cell's protection against these viruses has not been defined. Here we present the crystal structure of a ternary complex of Vpx with the human E3 ligase substrate adaptor DCAF1 and the carboxy-terminal region of human SAMHD1. Vpx is made up of a three-helical bundle stabilized by a zinc finger motif, and wraps tightly around the disc-shaped DCAF1 molecule to present a new molecular surface. This adapted surface is then able to recruit SAMHD1 via its C terminus, making it a competent substrate for the E3 ligase to mark for proteasomal degradation. The structure reported here provides a molecular description of how a lentiviral accessory protein is able to subvert the cell's normal protein degradation pathway to inactivate the cellular viral defence system.

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