4C8B image
Deposition Date 2013-09-30
Release Date 2013-10-16
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4C8B
Keywords:
Title:
Structure of the kinase domain of human RIPK2 in complex with ponatinib
Biological Source:
Source Organism(s):
HOMO SAPIENS (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2
Gene (Uniprot):RIPK2
Chain IDs:A, B
Chain Length:334
Number of Molecules:2
Biological Source:HOMO SAPIENS
Primary Citation
Inflammatory Signaling by NOD-RIPK2 Is Inhibited by Clinically Relevant Type II Kinase Inhibitors.
Chem. Biol. 22 1174 1184 (2015)
PMID: 26320862 DOI: 10.1016/j.chembiol.2015.07.017

Abstact

RIPK2 mediates pro-inflammatory signaling from the bacterial sensors NOD1 and NOD2, and is an emerging therapeutic target in autoimmune and inflammatory diseases. We observed that cellular RIPK2 can be potently inhibited by type II inhibitors that displace the kinase activation segment, whereas ATP-competitive type I inhibition was only poorly effective. The most potent RIPK2 inhibitors were the US Food and Drug Administration-approved drugs ponatinib and regorafenib. Their mechanism of action was independent of NOD2 interaction and involved loss of downstream kinase activation as evidenced by lack of RIPK2 autophosphorylation. Notably, these molecules also blocked RIPK2 ubiquitination and, consequently, inflammatory nuclear factor κB signaling. In monocytes, the inhibitors selectively blocked NOD-dependent tumor necrosis factor production without affecting lipopolysaccharide-dependent pathways. We also determined the first crystal structure of RIPK2 bound to ponatinib, and identified an allosteric site for inhibitor development. These results highlight the potential for type II inhibitors to treat indications of RIPK2 activation as well as inflammation-associated cancers.

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Primary Citation of related structures
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