4C56 image
Deposition Date 2013-09-10
Release Date 2014-07-23
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4C56
Title:
X-ray structure of the complex between staphylococcal enterotoxin B, T cell receptor and major histocompatibility complex class II
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T CELL RECEPTOR ALPHA CHAIN
Chain IDs:A, G
Chain Length:206
Number of Molecules:2
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T CELL RECEPTOR BETA CHAIN
Chain IDs:B, H
Chain Length:244
Number of Molecules:2
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ENTEROTOXIN B
Chain IDs:C, I
Chain Length:238
Number of Molecules:2
Biological Source:STAPHYLOCOCCUS AUREUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN
Gene (Uniprot):HLA-DRA
Chain IDs:D, J
Chain Length:182
Number of Molecules:2
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MHC CLASS II ANTIGEN
Chain IDs:E, K
Chain Length:190
Number of Molecules:2
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HEMAGGLUTININ
Chain IDs:F, L
Chain Length:13
Number of Molecules:2
Biological Source:INFLUENZA A VIRUS
Ligand Molecules
Primary Citation
Structure of the Superantigen Staphylococcal Enterotoxin B in Complex with Tcr and Peptide-Mhc Demonstrates Absence of Tcr-Peptide Contacts.
J.Immunol. 193 1998 ? (2014)
PMID: 25015819 DOI: 10.4049/JIMMUNOL.1401268

Abstact

Superantigens are immune-stimulatory toxins produced by Staphylococcus aureus, which are able to interact with host immune receptors to induce a massive release of cytokines, causing toxic shock syndrome and possibly death. In this article, we present the x-ray structure of staphylococcal enterotoxin B (SEB) in complex with its receptors, the TCR and MHC class II, forming a ternary complex. The structure, in combination with functional analyses, clearly shows how SEB adopts a wedge-like position when binding to the β-chain of TCR, allowing for an interaction between the α-chain of TCR and MHC. Furthermore, the binding mode also circumvents contact between TCR and the peptide presented by MHC, which enables SEB to initiate a peptide-independent activation of T cells.

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Protein

Chemical

Disease

Primary Citation of related structures
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