4C2I image
Deposition Date 2013-08-18
Release Date 2014-01-29
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4C2I
Keywords:
Title:
Cryo-EM structure of Dengue virus serotype 1 complexed with Fab fragments of human antibody 1F4
Biological Source:
Source Organism:
DENGUE VIRUS 1 (Taxon ID: 11053)
HOMO SAPIENS (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
6.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ENVELOPE PROTEIN
Gene (Uniprot):E
Chain IDs:A, C, E
Chain Length:495
Number of Molecules:3
Biological Source:DENGUE VIRUS 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:POLYPROTEIN
Chain IDs:B, D, F
Chain Length:75
Number of Molecules:3
Biological Source:DENGUE VIRUS 1
Polymer Type:polypeptide(L)
Molecule:HEAVY CHAIN FAB FRAGMENT OF ANTIBODY 1F4
Chain IDs:G (auth: H), I (auth: M)
Chain Length:232
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:LIGHT CHAIN FAB FRAGMENT OF ANTIBODY 1F4
Chain IDs:H (auth: L), J (auth: N)
Chain Length:239
Number of Molecules:2
Biological Source:HOMO SAPIENS
Ligand Molecules
Peptide-like Molecules
PRD_900017
Primary Citation
A Potent Anti-Dengue Human Antibody Preferentially Recognizes the Conformation of E Protein Monomers Assembled on the Virus Surface.
Embo Mol.Med. 6 358 ? (2014)
PMID: 24421336 DOI: 10.1002/EMMM.201303404

Abstact

Dengue virus (DENV), which consists of four serotypes (DENV1-4), infects over 400 million people annually. Previous studies have indicated most human monoclonal antibodies (HMAbs) from dengue patients are cross-reactive and poorly neutralizing. Rare neutralizing HMAbs are usually serotype-specific and bind to quaternary structure-dependent epitopes. We determined the structure of DENV1 complexed with Fab fragments of a highly potent HMAb 1F4 to 6 Å resolution by cryo-EM. Although HMAb 1F4 appeared to bind to virus and not E proteins in ELISAs in the previous study, our structure showed that the epitope is located within an envelope (E) protein monomer, and not across neighboring E proteins. The Fab molecules bind to domain I (DI), and DI-DII hinge of the E protein. We also showed that HMAb 1F4 can neutralize DENV at different stages of viral entry in a cell type and receptor dependent manner. The structure reveals the mechanism by which this potent and specific antibody blocks viral infection.

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Protein

Chemical

Disease

Primary Citation of related structures
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