4BZC image
Deposition Date 2013-07-25
Release Date 2013-10-23
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4BZC
Keywords:
Title:
Crystal structure of the tetrameric dGTP-bound wild type SAMHD1 catalytic core
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.88 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1
Gene (Uniprot):SAMHD1
Chain IDs:A, B, C, D
Chain Length:550
Number of Molecules:4
Biological Source:HOMO SAPIENS
Primary Citation
Mechanism of Allosteric Activation of Samhd1 by Dgtp
Nat.Struct.Mol.Biol. 20 1304 ? (2013)
PMID: 24141705 DOI: 10.1038/NSMB.2692

Abstact

SAMHD1, a dNTP triphosphohydrolase (dNTPase), has a key role in human innate immunity. It inhibits infection of blood cells by retroviruses, including HIV, and prevents the development of the autoinflammatory Aicardi-Goutières syndrome (AGS). The inactive apo-SAMHD1 interconverts between monomers and dimers, and in the presence of dGTP the protein assembles into catalytically active tetramers. Here, we present the crystal structure of the human tetrameric SAMHD1-dGTP complex. The structure reveals an elegant allosteric mechanism of activation through dGTP-induced tetramerization of two inactive dimers. Binding of dGTP to four allosteric sites promotes tetramerization and induces a conformational change in the substrate-binding pocket to yield the catalytically active enzyme. Structure-based biochemical and cell-based biological assays confirmed the proposed mechanism. The SAMHD1 tetramer structure provides the basis for a mechanistic understanding of its function in HIV restriction and the pathogenesis of AGS.

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