4BY6 image
Deposition Date 2013-07-18
Release Date 2013-10-16
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4BY6
Keywords:
Title:
Yeast Not1-Not2-Not5 complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1
Chain IDs:A, D
Chain Length:553
Number of Molecules:2
Biological Source:SACCHAROMYCES CEREVISIAE
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 2
Gene (Uniprot):CDC36
Chain IDs:B, E
Chain Length:191
Number of Molecules:2
Biological Source:SACCHAROMYCES CEREVISIAE
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 5
Gene (Uniprot):NOT5
Chain IDs:C, F
Chain Length:262
Number of Molecules:2
Biological Source:SACCHAROMYCES CEREVISIAE
Primary Citation
Structure and RNA-Binding Properties of the not1-not2-not5 Module of the Yeast Ccr4-not Complex
Nat.Struct.Mol.Biol. 20 1281 ? (2013)
PMID: 24121231 DOI: 10.1038/NSMB.2686

Abstact

The Ccr4-Not complex is involved in several aspects of gene expression, including mRNA decay, translational repression and transcription. We determined the 2.8-Å-resolution crystal structure of a 120-kDa core complex of the Saccharomyces cerevisiae Not module comprising the C-terminal arm of Not1, Not2 and Not5. Not1 is a HEAT-repeat scaffold. Not2 and Not5 have extended regions that wrap around Not1 and around their globular domains, the Not boxes. The Not boxes resemble Sm folds and interact with each other with a noncanonical dimerization surface. Disruption of the interactions within the ternary complex has severe effects on growth in vivo. The ternary complex forms a composite surface that binds poly(U) RNA in vitro, with a site at the Not5 Not box. The results suggest that the Not module forms a versatile platform for macromolecular interactions.

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Primary Citation of related structures
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