4BOE image
Deposition Date 2013-05-19
Release Date 2014-05-28
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4BOE
Title:
Japanin from Rhipicephalus appendiculatus bound to cholesterol: Tetragonal crystal form
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.24 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:JAPANIN
Chain IDs:A
Chain Length:160
Number of Molecules:1
Biological Source:RHIPICEPHALUS APPENDICULATUS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Structural basis of cholesterol binding by a novel clade of dendritic cell modulators from ticks.
Sci Rep 7 16057 16057 (2017)
PMID: 29167574 DOI: 10.1038/s41598-017-16413-2

Abstact

Two crystal structures of Japanin, an 18 kDa immune-modulatory lipocalin from the Brown Ear Tick (Rhipicephalus appendiculatus), have been determined at 2.2 and 2.4 Å resolution. In both crystal forms the protein is in complex with cholesterol, which sits in a closed pocket at the centre of the lipocalin barrel. Both crystal forms are dimers, which are also observed in solution. Molecular modelling suggests that previously-described members of a tick protein family bearing high sequence homology to Japanin are also likely to bind cholesterol or cholesterol derivatives.

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Protein

Chemical

Disease

Primary Citation of related structures
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