4BKL image
Deposition Date 2013-04-26
Release Date 2014-02-05
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4BKL
Keywords:
Title:
Crystal structure of the arthritogenic antibody M2139 (Fab fragment) in complex with the triple-helical J1 peptide
Biological Source:
Source Organism:
MUS MUSCULUS (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
3.25 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:M2139 FAB FRAGMENT HEAVY CHAIN
Chain IDs:A
Chain Length:231
Number of Molecules:1
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Molecule:M2139 FAB FRAGMENT LIGHT CHAIN
Chain IDs:B
Chain Length:218
Number of Molecules:1
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Molecule:J1 EPITOPE
Chain IDs:C (auth: E), D (auth: F), E (auth: G)
Chain Length:37
Number of Molecules:3
Biological Source:MUS MUSCULUS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HYP C PRO 4-HYDROXYPROLINE
Ligand Molecules
Primary Citation
Epitope-Specific Antibody Response is Controlled by Immunoglobulin Vh Polymorphisms.
J.Exp.Med. 211 405 ? (2014)
PMID: 24534192 DOI: 10.1084/JEM.20130968

Abstact

Autoantibody formation is essential for the development of certain autoimmune diseases like rheumatoid arthritis (RA). Anti-type II collagen (CII) antibodies are found in RA patients; they interact with cartilage in vivo and are often highly pathogenic in the mouse. Autoreactivity to CII is directed to multiple epitopes and conserved between mice and humans. We have previously mapped the antibody response to CII in a heterogeneous stock cohort of mice, with a strong association with the IgH locus. We positioned the genetic polymorphisms and determined the structural requirements controlling antibody recognition of one of the major CII epitopes. Polymorphisms at positions S31R and W33T of the associated variable heavy chain (VH) allele were identified and confirmed by gene sequencing. The Fab fragment binding the J1 epitope was crystallized, and site-directed mutagenesis confirmed the importance of those two variants for antigen recognition. Back mutation to germline sequence provided evidence for a preexisting recognition of the J1 epitope. These data demonstrate a genetic association of epitope-specific antibody responses with specific VH alleles, and it highlights the importance of germline-encoded antibodies in the pathogenesis of antibody-mediated autoimmune diseases.

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Primary Citation of related structures