4BE8 image
Deposition Date 2013-03-06
Release Date 2013-05-01
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4BE8
Keywords:
Title:
NEDD4 HECT A889F structure
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 UBIQUITIN-PROTEIN LIGASE NEDD4
Gene (Uniprot):NEDD4
Mutations:YES
Chain IDs:A
Chain Length:385
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Structure of a Ubiquitin-Loaded Hect Ligase Reveals the Molecular Basis for Catalytic Priming
Nat.Struct.Mol.Biol. 20 696 ? (2013)
PMID: 23644597 DOI: 10.1038/NSMB.2566

Abstact

Homologous to E6-AP C terminus (HECT) E3 ligases recognize and directly catalyze ligation of ubiquitin (Ub) to their substrates. Molecular details of this process remain unknown. We report the first structure, to our knowledge, of a Ub-loaded E3, the human neural precursor cell-expressed developmentally downregulated protein 4 (Nedd4). The HECT(Nedd4)~Ub transitory intermediate provides a structural basis for the proposed sequential addition mechanism. The donor Ub, transferred from the E2, is bound to the Nedd4 C lobe with its C-terminal tail locked in an extended conformation, primed for catalysis. We provide evidence that the Nedd4-family members are Lys63-specific enzymes whose catalysis is mediated by an essential C-terminal acidic residue.

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