4BCE image
Entry Detail
PDB ID:
4BCE
Keywords:
Title:
crystal structure of Ttb-gly N282T mutant
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-10-02
Release Date:
2013-03-06
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:BETA-GLUCOSIDASE
Mutations:YES
Chain IDs:A, B, C
Chain Length:437
Number of Molecules:3
Biological Source:THERMUS THERMOPHILUS HB8
Primary Citation
Semi-Rational Approach for Converting a Gh1 Beta-Glycosidase Into a Beta-Transglycosidase.
Protein Eng.Des.Sel. 27 13 ? (2014)
PMID: 24287187 DOI: 10.1093/PROTEIN/GZT057

Abstact

A large number of retaining glycosidases catalyze both hydrolysis and transglycosylation reactions, but little is known about what determines the balance between these two activities (transglycosylation/hydrolysis ratio). We previously obtained by directed evolution the mutants F401S and N282T of Thermus thermophilus β-glycosidase (Ttβ-gly, glycoside hydrolase family 1 (GH1)), which display a higher transglycosylation/hydrolysis ratio than the wild-type enzyme. In order to find the cause of these activity modifications, and thereby set up a generic method for easily obtaining transglycosidases from glycosidases, we determined their X-ray structure. No major structural changes could be observed which could help to rationalize the mutagenesis of glycosidases into transglycosidases. However, as these mutations are highly conserved in GH1 β-glycosidases and are located around the -1 site, we pursued the isolation of new transglycosidases by targeting highly conserved amino acids located around the active site. Thus, by single-point mutagenesis on Ttβ-gly, we created four new mutants that exhibit improved synthetic activity, producing disaccharides in yields of 68-90% against only 36% when native Ttβ-gly was used. As all of the chosen positions were well conserved among GH1 enzymes, this approach is most probably a general route to convert GH1 glycosidases into transglycosidases.

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