4B6G image
Deposition Date 2012-08-13
Release Date 2012-11-14
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4B6G
Keywords:
Title:
The Crystal Structure of the Neisserial Esterase D.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.15
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PUTATIVE ESTERASE
Gene (Uniprot):NMB1305
Chain IDs:A, B
Chain Length:283
Number of Molecules:2
Biological Source:NEISSERIA MENINGITIDIS MC58
Primary Citation
A glutathione-dependent detoxification system is required for formaldehyde resistance and optimal survival of Neisseria meningitidis in biofilms.
Antioxid. Redox Signal. 18 743 755 (2013)
PMID: 22937752 DOI: 10.1089/ars.2012.4749

Abstact

AIM The glutathione-dependent AdhC-EstD formaldehyde detoxification system is found in eukaryotes and prokaryotes. It is established that it confers protection against formaldehyde that is produced from environmental sources or methanol metabolism. Thus, its presence in the human host-adapted bacterial pathogen Neisseria meningitidis is intriguing. This work defined the biological function of this system in the meningococcus using phenotypic analyses of mutants linked to biochemical and structural characterization of purified enzymes. RESULTS We demonstrated that mutants in the adhC and/or estD were sensitive to killing by formaldehyde. Inactivation of adhC and/or estD also led to a loss of viability in biofilm communities, even in the absence of exogenous formaldehyde. Detailed biochemical and structural analyses of the esterase component demonstrated that S-formylglutathione was the only biologically relevant substrate for EstD. We further showed that an absolutely conserved cysteine residue was covalently modified by S-glutathionylation. This leads to inactivation of EstD. INNOVATION The results provide several conceptual innovations. They provide a new insight into formaldehyde detoxification in bacteria that do not generate formaldehyde during the catabolism of methanol. Our results also indicate that the conserved cysteine, found in all EstD enzymes from humans to microbes, is a site of enzyme regulation, probably via S-glutathionylation. CONCLUSION The adhc-estD system protects against formaldehyde produced during endogenous metabolism.

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