4B4N image
Deposition Date 2012-07-31
Release Date 2012-09-19
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4B4N
Title:
CPSF6 defines a conserved capsid interface that modulates HIV-1 replication
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.81 Å
R-Value Free:
0.27
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GAG PROTEIN
Gene (Uniprot):gag
Chain IDs:A
Chain Length:146
Number of Molecules:1
Biological Source:HUMAN IMMUNODEFICIENCY VIRUS 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6
Gene (Uniprot):CPSF6
Chain IDs:B
Chain Length:15
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Cpsf6 Defines a Conserved Capsid Interface that Modulates HIV-1 Replication.
Plos Pathog. 8 2896 ? (2012)
PMID: 22956906 DOI: 10.1371/JOURNAL.PPAT.1002896

Abstact

The HIV-1 genome enters cells inside a shell comprised of capsid (CA) protein. Variation in CA sequence alters HIV-1 infectivity and escape from host restriction factors. However, apart from the Cyclophilin A-binding loop, CA has no known interfaces with which to interact with cellular cofactors. Here we describe a novel protein-protein interface in the N-terminal domain of HIV-1 CA, determined by X-ray crystallography, which mediates both viral restriction and host cofactor dependence. The interface is highly conserved across lentiviruses and is accessible in the context of a hexameric lattice. Mutation of the interface prevents binding to and restriction by CPSF6-358, a truncated cytosolic form of the RNA processing factor, cleavage and polyadenylation specific factor 6 (CPSF6). Furthermore, mutations that prevent CPSF6 binding also relieve dependence on nuclear entry cofactors TNPO3 and RanBP2. These results suggest that the HIV-1 capsid mediates direct host cofactor interactions to facilitate viral infection.

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Primary Citation of related structures
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