4B3G image
Deposition Date 2012-07-24
Release Date 2012-09-26
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4B3G
Keywords:
Title:
crystal structure of Ighmbp2 helicase in complex with RNA
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.29
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-BINDING PROTEIN SMUBP-2
Gene (Uniprot):IGHMBP2
Chain IDs:A, B
Chain Length:646
Number of Molecules:2
Biological Source:HOMO SAPIENS
Primary Citation
The Ighmbp2 Helicase Structure Reveals the Molecular Basis for Disease-Causing Mutations in Dmsa1.
Nucleic Acids Res. 40 11009 ? (2012)
PMID: 22965130 DOI: 10.1093/NAR/GKS792

Abstact

Mutations in immunoglobulin µ-binding protein 2 (Ighmbp2) cause distal spinal muscular atrophy type 1 (DSMA1), an autosomal recessive disease that is clinically characterized by distal limb weakness and respiratory distress. However, despite extensive studies, the mechanism of disease-causing mutations remains elusive. Here we report the crystal structures of the Ighmbp2 helicase core with and without bound RNA. The structures show that the overall fold of Ighmbp2 is very similar to that of Upf1, a key helicase involved in nonsense-mediated mRNA decay. Similar to Upf1, domains 1B and 1C of Ighmbp2 undergo large conformational changes in response to RNA binding, rotating 30° and 10°, respectively. The RNA binding and ATPase activities of Ighmbp2 are further enhanced by the R3H domain, located just downstream of the helicase core. Mapping of the pathogenic mutations of DSMA1 onto the helicase core structure provides a molecular basis for understanding the disease-causing consequences of Ighmbp2 mutations.

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Primary Citation of related structures