4B2D image
Deposition Date 2012-07-13
Release Date 2012-10-10
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4B2D
Keywords:
Title:
human PKM2 with L-serine and FBP bound.
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PYRUVATE KINASE ISOZYMES M1/M2
Gene (Uniprot):PKM
Chain IDs:A, B, C
Chain Length:548
Number of Molecules:3
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:PYRUVATE KINASE ISOZYMES M1/M2
Gene (Uniprot):PKM
Chain IDs:D
Chain Length:548
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Serine is a natural ligand and allosteric activator of pyruvate kinase M2.
Nature 491 458 462 (2012)
PMID: 23064226 DOI: 10.1038/nature11540

Abstact

Cancer cells exhibit several unique metabolic phenotypes that are critical for cell growth and proliferation. Specifically, they overexpress the M2 isoform of the tightly regulated enzyme pyruvate kinase (PKM2), which controls glycolytic flux, and are highly dependent on de novo biosynthesis of serine and glycine. Here we describe a new rheostat-like mechanistic relationship between PKM2 activity and serine biosynthesis. We show that serine can bind to and activate human PKM2, and that PKM2 activity in cells is reduced in response to serine deprivation. This reduction in PKM2 activity shifts cells to a fuel-efficient mode in which more pyruvate is diverted to the mitochondria and more glucose-derived carbon is channelled into serine biosynthesis to support cell proliferation.

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Primary Citation of related structures