4AY6 image
Deposition Date 2012-06-18
Release Date 2012-10-24
Last Version Date 2025-04-09
Entry Detail
PDB ID:
4AY6
Keywords:
Title:
Human O-GlcNAc transferase (OGT) in complex with UDP-5SGlcNAc and substrate peptide
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 3 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANS FERASE 110 KDA SUBUNIT
Gene (Uniprot):OGT
Chain IDs:A, B, C, D
Chain Length:723
Number of Molecules:4
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1
Gene (Uniprot):TAB1
Chain IDs:E, F, G, H
Chain Length:13
Number of Molecules:4
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
DNP E ALA 3-AMINO-ALANINE
Primary Citation
O-Glcnac Transferase Invokes Nucleotide Sugar Pyrophosphate Participation in Catalysis
Nat.Chem.Biol. 8 969 ? (2012)
PMID: 23103942 DOI: 10.1038/NCHEMBIO.1108

Abstact

Protein O-GlcNAcylation is an essential post-translational modification on hundreds of intracellular proteins in metazoa, catalyzed by O-linked β-N-acetylglucosamine (O-GlcNAc) transferase (OGT) using unknown mechanisms of transfer and substrate recognition. Through crystallographic snapshots and mechanism-inspired chemical probes, we define how human OGT recognizes the sugar donor and acceptor peptide and uses a new catalytic mechanism of glycosyl transfer, involving the sugar donor α-phosphate as the catalytic base as well as an essential lysine. This mechanism seems to be a unique evolutionary solution to the spatial constraints imposed by a bulky protein acceptor substrate and explains the unexpected specificity of a recently reported metabolic OGT inhibitor.

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Primary Citation of related structures