4AS1 image
Deposition Date 2012-04-27
Release Date 2012-06-13
Last Version Date 2024-01-31
Entry Detail
PDB ID:
4AS1
Keywords:
Title:
Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.02 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LEUCINE--TRNA LIGASE
Gene (Uniprot):leuS
Chain IDs:A
Chain Length:880
Number of Molecules:1
Biological Source:ESCHERICHIA COLI
Polymer Type:polyribonucleotide
Molecule:TRNA-LEU5 (UAA ISOACEPTOR)
Chain IDs:B
Chain Length:87
Number of Molecules:1
Biological Source:ESCHERICHIA COLI
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
N79 B A ?
Ligand Molecules
Primary Citation
Structural Dynamics of the Aminoacylation and Proofreading Functional Cycle of Bacterial Leucyl-tRNA Synthetase
Nat.Struct.Mol.Biol. 19 677 ? (2012)
PMID: 22683997 DOI: 10.1038/NSMB.2317

Abstact

Leucyl-tRNA synthetase (LeuRS) produces error-free leucyl-tRNA(Leu) by coordinating translocation of the 3' end of (mis-)charged tRNAs from its synthetic site to a separate proofreading site for editing. Here we report cocrystal structures of the Escherichia coli LeuRS-tRNA(Leu) complex in the aminoacylation or editing conformations, showing that translocation involves correlated rotations of four flexibly linked LeuRS domains. This pivots the tRNA to guide its charged 3' end from the closed aminoacylation state to the editing site. The editing domain unexpectedly stabilizes the tRNA during aminoacylation, and a large rotation of the leucine-specific domain positions the conserved KMSKS loop to bind the 3' end of the tRNA, promoting catalysis. Our results give new insight into the structural dynamics of a molecular machine that is essential for accurate protein synthesis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures