4ARR image
Deposition Date 2012-04-26
Release Date 2013-02-27
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4ARR
Keywords:
Title:
Crystal structure of the N-terminal domain of Drosophila Toll receptor with the magic triangle I3C
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TOLL RECEPTOR, VARIABLE LYMPHOCYTE RECEPTOR B.61 CHIMERA
Gene (Uniprot):Tl, VLRB
Chain IDs:A, B
Chain Length:279
Number of Molecules:2
Biological Source:DROSOPHILA MELANOGASTER, EPTATRETUS BURGERI
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Liesegang-Like Patterns of Toll Crystals Grown in Gel.
J.Appl.Crystallogr. 46 337 ? (2013)
PMID: 23596340 DOI: 10.1107/S0021889812051606

Abstact

Generating high-quality crystals remains a bottleneck in biological and materials sciences. Here a counter-diffusion method was used to improve the X-ray diffraction quality of the N-terminal domain of Drosophila melanogaster Toll receptor crystals. It was observed that crystallization occurred with a peculiar pattern along the capillary resembling Liesegang bands; this phenomenon is described at both macroscopic and atomic levels. It was found that bands appeared for native protein as well as for co-crystals of magic triangle (I3C)-bound protein even though they crystallize in different space groups. Crystallization occurred with a linear recurrence independent of the precipitant concentration and a protein-specific spacing coefficient. Bandwidth varied along the capillary, oscillating between large precipitation areas and single crystals. The reported data suggest that repetitive patterns can be generated with biological macromolecules in the presence of sodium malonate as a crystallization agent. A comparison with typical Liesegang patterns and the possible mechanism underlying this phenomenon are discussed.

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Primary Citation of related structures