4ARM image
Deposition Date 2012-04-25
Release Date 2012-05-02
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4ARM
Keywords:
Title:
Structure of the inactive pesticin T201A mutant
Biological Source:
Source Organism:
YERSINIA PESTIS (Taxon ID: 632)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PESTICIN
Gene (Uniprot):pst
Mutations:YES
Chain IDs:A
Chain Length:359
Number of Molecules:1
Biological Source:YERSINIA PESTIS
Polymer Type:polypeptide(L)
Molecule:PESTICIN
Gene (Uniprot):pst
Mutations:YES
Chain IDs:B
Chain Length:359
Number of Molecules:1
Biological Source:YERSINIA PESTIS
Primary Citation
Structure and Mechanistic Studies of Pesticin, a Bacterial Homolog of Phage Lysozymes.
J.Biol.Chem. 287 23381 ? (2012)
PMID: 22593569 DOI: 10.1074/JBC.M112.362913

Abstact

Yersinia pestis produces and secretes a toxin named pesticin that kills related bacteria of the same niche. Uptake of the bacteriocin is required for activity in the periplasm leading to hydrolysis of peptidoglycan. To understand the uptake mechanism and to investigate the function of pesticin, we combined crystal structures of the wild type enzyme, active site mutants, and a chimera protein with in vivo and in vitro activity assays. Wild type pesticin comprises an elongated N-terminal translocation domain, the intermediate receptor binding domain, and a C-terminal activity domain with structural analogy to lysozyme homologs. The full-length protein is toxic to bacteria when taken up to the target site via the outer or the inner membrane. Uptake studies of deletion mutants in the translocation domain demonstrate their critical size for import. To further test the plasticity of pesticin during uptake into bacterial cells, the activity domain was replaced by T4 lysozyme. Surprisingly, this replacement resulted in an active chimera protein that is not inhibited by the immunity protein Pim. Activity of pesticin and the chimera protein was blocked through introduction of disulfide bonds, which suggests unfolding as the prerequisite to gain access to the periplasm. Pesticin, a muramidase, was characterized by active site mutations demonstrating a similar but not identical residue pattern in comparison with T4 lysozyme.

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