ISDA

Deposition Date 2012-04-05

Release Date 2013-04-24

Last Version Date 2024-10-23

Entry Detail

PDB ID:

4APQ

Keywords:

IMMUNE SYSTEM

Title:

Crystal structure of autoreactive-Valpha14-Vbeta6 NKT TCR in complex with CD1d-sulfatide

Biological Source:

Source Organism:

MUS MUSCULUS (Taxon ID: 10090)

Host Organism:

TRICHOPLUSIA NI

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.00 Å

R-Value Free:

0.23

R-Value Work:

0.17

R-Value Observed:

0.18

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1
Gene (Uniprot):Cd1d1
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:MUS MUSCULUS

UniProt ID:P11609 Pfam ID:PF16497, PF07654

Protein Blast

Polymer Type:polypeptide(L)
Molecule:BETA-2-MICROGLOBULIN
Gene (Uniprot):B2m
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:MUS MUSCULUS

UniProt ID:P01887 Pfam ID:PF07654

Protein Blast

Polymer Type:polypeptide(L)
Molecule:MOUSE NKT TCR VALPHA14, HUMAN NKT TCR VALPHA14
Chain IDs:C
Chain Length:207
Number of Molecules:1
Biological Source:MUS MUSCULUS

UniProt ID:P01848 Pfam ID:PF09291

Polymer Type:polypeptide(L)
Molecule:MOUSE NKT TCR AUTOREACTIVE-VBETA6, HUMAN NKT TCR AUTOREACTIVE-VBETA6
Chain IDs:D
Chain Length:243
Number of Molecules:1
Biological Source:MUS MUSCULUS

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ASN	A	ASN	GLYCOSYLATION SITE

Ligand Molecules

CIS

Primary Citation

Type-II Natural Killer T Cell Antigen Receptor Mediated Recognition of Cd1D-Sulfatide

Patel, O, Pellicci, D.G, Gras, S, Clarke, A.J, Sandoval-Romero, M, Le Nours, J, Theodossis, A, Mallevaey, T, Gapin, L, Cardell, S, Godfrey, D.I, Rossjohn, J.Show

To be Published ? ? ? (?)

Primary Citation of related structures