4AN5 image
Deposition Date 2012-03-15
Release Date 2012-08-29
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4AN5
Keywords:
Title:
Capsid structure and its Stability at the Late Stages of Bacteriophage SPP1 Assembly
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
8.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:COAT PROTEIN
Gene (Uniprot):13
Chain IDs:A, B, C, D, E, F, G
Chain Length:324
Number of Molecules:7
Biological Source:BACILLUS PHAGE SPP1
Ligand Molecules
Primary Citation
Capsid Structure and its Stability at the Late Stages of Bacteriophage Spp1 Assembly.
J.Virol. 86 6768 ? (2012)
PMID: 22514336 DOI: 10.1128/JVI.00412-12

Abstact

The structure of the bacteriophage SPP1 capsid was determined at subnanometer resolution by cryo-electron microscopy and single-particle analysis. The icosahedral capsid is composed of the major capsid protein gp13 and the auxiliary protein gp12, which are organized in a T=7 lattice. DNA is arranged in layers with a distance of ~24.5 Å. gp12 forms spikes that are anchored at the center of gp13 hexamers. In a gp12-deficient mutant, the centers of hexamers are closed by loops of gp13 coming together to protect the SPP1 genome from the outside environment. The HK97-like fold was used to build a pseudoatomic model of gp13. Its structural organization remains unchanged upon tail binding and following DNA release. gp13 exhibits enhanced thermostability in the DNA-filled capsid. A remarkable convergence between the thermostability of the capsid and those of the other virion components was found, revealing that the overall architecture of the SPP1 infectious particle coevolved toward high robustness.

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Primary Citation of related structures