4AL2 image
Deposition Date 2012-02-29
Release Date 2012-04-04
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4AL2
Keywords:
Title:
peptide deformylase (Ni-form) with hydrosulfide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.29
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PEPTIDE DEFORMYLASE
Gene (Uniprot):def
Chain IDs:A, B, C
Chain Length:186
Number of Molecules:3
Biological Source:ESCHERICHIA COLI
Primary Citation
A Fret Enzyme-Based Probe for Monitoring Hydrogen Sulfide.
Inorg.Chem. 51 11220 ? (2012)
PMID: 23072298 DOI: 10.1021/IC301363D

Abstact

Fluorescently labeled cobalt peptide deformylase (Co-PDF) can be efficiently used as a fluorescence-resonance-energy-transfer-based sensing device for hydrogen sulfide (H(2)S). The proof of concept of our sensor system is substantiated by spectroscopic, structural, and theoretical results. Monohydrogen sulfide coordination to Co-PDF and Ni-PDF was verified by X-ray crystallography. Density functional theory calculations were performed to gain insight into the characteristics of the coordination adduct between H(2)S and the cobalt cofactor in Co-PDF.

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