4AKY image
Deposition Date 2012-02-29
Release Date 2012-09-05
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4AKY
Title:
CRYSTAL STRUCTURE OF VIRB8 FROM BRUCELLA SUIS IN COMPLEX WITH INTERACTION INHIBITOR 2-(butylamino)-8-quinolinol
Biological Source:
Source Organism:
BRUCELLA SUIS (Taxon ID: 29461)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 41 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TYPE IV SECRETION SYSTEM PROTEIN VIRB8
Gene (Uniprot):virB8
Chain IDs:A, B, C, D, E
Chain Length:138
Number of Molecules:5
Biological Source:BRUCELLA SUIS
Ligand Molecules
Primary Citation
Identification of the Binding Site of Brucella Virb8 Interaction Inhibitors.
Chem.Biol. 19 1041 ? (2012)
PMID: 22921071 DOI: 10.1016/J.CHEMBIOL.2012.07.007

Abstact

Secretion systems translocate virulence factors of many bacterial pathogens, enabling their survival inside the host organism. Consequently, inhibition strongly attenuates pathogenicity and can be considered a target for novel antimicrobial drugs. The type IV secretion system (T4SS) of the intracellular pathogen Brucella is a prerequisite for its virulence, and in this work we targeted the interactions of the essential assembly factor protein, VirB8, using small-molecule inhibitors. High-throughput screening identified several potent and specific inhibitors, and the target-binding site of these inhibitors was identified by X-ray crystallography, in silico docking, and analysis of the derivates of the inhibitor B8I-2. VirB8 interaction inhibitors bind to a surface groove opposite to the dimerization interface, and by varying the binding-site residues, we were able to determine which residues are required for inhibitor activity. E115 and K182 were found to be especially important, and changes at R114, Y229, and L151 also reduced inhibitor efficiency.

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Chemical

Disease

Primary Citation of related structures
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