4AG4 image
Deposition Date 2012-01-24
Release Date 2012-04-18
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4AG4
Title:
Crystal structure of a DDR1-Fab complex
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
MUS MUSCULUS (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1
Gene (Uniprot):DDR1
Chain IDs:A
Chain Length:351
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:MONOCLONAL ANTIBODY 3E3 HEAVY CHAIN
Chain IDs:B (auth: H)
Chain Length:215
Number of Molecules:1
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Molecule:MONOCLONAL ANTIBODY 3E3 LIGHT CHAIN
Chain IDs:C (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:MUS MUSCULUS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structure of the Discoidin Domain Receptor 1 Extracellular Region Bound to an Inhibitory Fab Fragment Reveals Features Important for Signaling.
Structure 20 688 ? (2012)
PMID: 22483115 DOI: 10.1016/J.STR.2012.02.011

Abstact

The discoidin domain receptors, DDR1 and DDR2, are constitutively dimeric receptor tyrosine kinases that are activated by triple-helical collagen. Aberrant DDR signaling contributes to several human pathologies, including many cancers. We have generated monoclonal antibodies (mAbs) that inhibit DDR1 signaling without interfering with collagen binding. The crystal structure of the monomeric DDR1 extracellular region bound to the Fab fragment of mAb 3E3 reveals that the collagen-binding discoidin (DS) domain is tightly associated with the following DS-like domain, which contains the epitopes of all mAbs. A conserved surface patch in the DS domain outside the collagen-binding site is shown to be required for signaling. Thus, the active conformation of the DDR1 dimer involves collagen-induced contacts between the DS domains, in addition to the previously identified association of transmembrane helices. The mAbs likely inhibit signaling by sterically blocking the extracellular association of DDR1 subunits.

Legend

Protein

Chemical

Disease

Primary Citation of related structures