4AFI image
Deposition Date 2012-01-19
Release Date 2012-05-30
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4AFI
Keywords:
Title:
Complex between Vamp7 longin domain and fragment of delta-adaptin from AP3
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
MUS MUSCULUS (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 43 21 2
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-3 COMPLEX SUBUNIT DELTA-1, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7
Gene (Uniprot):AP3D1, Vamp7
Chain IDs:A, B
Chain Length:173
Number of Molecules:2
Biological Source:HOMO SAPIENS, MUS MUSCULUS
Ligand Molecules
Primary Citation
Structural Basis of the Intracellular Sorting of the Snare Vamp7 by the Ap3 Adaptor Complex
Dev.Cell 22 979 ? (2012)
PMID: 22521722 DOI: 10.1016/J.DEVCEL.2012.01.018

Abstact

VAMP7 is involved in the fusion of late endocytic compartments with other membranes. One possible mechanism of VAMP7 delivery to these late compartments is via the AP3 trafficking adaptor. We show that the linker of the δ-adaptin subunit of AP3 binds the VAMP7 longin domain and determines the structure of their complex. Mutation of residues on both partners abolishes the interaction in vitro and in vivo. The binding of VAMP7 to δ-adaptin requires the VAMP7 SNARE motif to be engaged in SNARE complex formation and hence AP3 must transport VAMP7 when VAMP7 is part of a cis-SNARE complex. The absence of δ-adaptin causes destabilization of the AP3 complex in mouse mocha fibroblasts and mislocalization of VAMP7. The mislocalization can be rescued by transfection with wild-type δ-adaptin but not by δ-adaptin containing mutations that abolish VAMP7 binding, despite in all cases intact AP3 being present and LAMP1 trafficking being rescued.

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Primary Citation of related structures