4AE4 image
Deposition Date 2012-01-06
Release Date 2012-03-21
Last Version Date 2025-04-09
Entry Detail
PDB ID:
4AE4
Title:
The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a novel SOUBA domain
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.19
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:UBIQUITIN-ASSOCIATED PROTEIN 1
Gene (Uniprot):UBAP1
Mutations:YES
Chain IDs:A
Chain Length:118
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:UBIQUITIN-ASSOCIATED PROTEIN 1
Gene (Uniprot):UBAP1
Mutations:YES
Chain IDs:B
Chain Length:118
Number of Molecules:1
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
MSO B MET SELENOMETHIONINE SELENOXIDE
Primary Citation
The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a SOUBA domain.
Structure 20 414 428 (2012)
PMID: 22405001 DOI: 10.1016/j.str.2011.12.013

Abstact

The endosomal sorting complexes required for transport (ESCRTs) facilitate endosomal sorting of ubiquitinated cargo, MVB biogenesis, late stages of cytokinesis, and retroviral budding. Here we show that ubiquitin associated protein 1 (UBAP1), a subunit of human ESCRT-I, coassembles in a stable 1:1:1:1 complex with Vps23/TSG101, VPS28, and VPS37. The X-ray crystal structure of the C-terminal region of UBAP1 reveals a domain that we describe as a solenoid of overlapping UBAs (SOUBA). NMR analysis shows that each of the three rigidly arranged overlapping UBAs making up the SOUBA interact with ubiquitin. We demonstrate that UBAP1-containing ESCRT-I is essential for degradation of antiviral cell-surface proteins, such as tetherin (BST-2/CD317), by viral countermeasures, namely, the HIV-1 accessory protein Vpu and the Kaposi sarcoma-associated herpesvirus (KSHV) ubiquitin ligase K5.

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Primary Citation of related structures