4A9A image
Deposition Date 2011-11-25
Release Date 2012-10-03
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4A9A
Keywords:
Title:
Structure of Rbg1 in complex with Tma46 dfrp domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.67 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIBOSOME-INTERACTING GTPASE 1
Gene (Uniprot):RBG1
Chain IDs:A, B
Chain Length:376
Number of Molecules:2
Biological Source:SACCHAROMYCES CEREVISIAE
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TRANSLATION MACHINERY-ASSOCIATED PROTEIN 46
Gene (Uniprot):TMA46
Chain IDs:C, D
Chain Length:142
Number of Molecules:2
Biological Source:SACCHAROMYCES CEREVISIAE
Primary Citation
Rbg1-Tma46 Dimer Structure Reveals New Functional Domains and Their Role in Polysome Recruitment.
Nucleic Acids Res. 40 11100 ? (2012)
PMID: 23002146 DOI: 10.1093/NAR/GKS867

Abstact

Developmentally Regulated GTP-binding (DRG) proteins are highly conserved GTPases that associate with DRG Family Regulatory Proteins (DFRP). The resulting complexes have recently been shown to participate in eukaryotic translation. The structure of the Rbg1 GTPase, a yeast DRG protein, in complex with the C-terminal region of its DFRP partner, Tma46, was solved by X-ray diffraction. These data reveal that DRG proteins are multimodular factors with three additional domains, helix-turn-helix (HTH), S5D2L and TGS, packing against the GTPase platform. Surprisingly, the S5D2L domain is inserted in the middle of the GTPase sequence. In contrast, the region of Tma46 interacting with Rbg1 adopts an extended conformation typical of intrinsically unstructured proteins and contacts the GTPase and TGS domains. Functional analyses demonstrate that the various domains of Rbg1, as well as Tma46, modulate the GTPase activity of Rbg1 and contribute to the function of these proteins in vivo. Dissecting the role of the different domains revealed that the Rbg1 TGS domain is essential for the recruitment of this factor in polysomes, supporting further the implication of these conserved factors in translation.

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