4A4W image
Deposition Date 2011-10-20
Release Date 2012-10-03
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4A4W
Keywords:
Title:
Ligand binding domain of human PPAR gamma in complex with amorfrutin B
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
Gene (Uniprot):PPARG
Chain IDs:A, B
Chain Length:287
Number of Molecules:2
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
Structural Characterization of Amorfrutins Bound to the Peroxisome Proliferator-Activated Receptor Gamma.
J.Med.Chem. 56 1535 ? (2013)
PMID: 23286787 DOI: 10.1021/JM3013272

Abstact

Amorfrutins are a family of natural products with high affinity to the peroxisome proliferator-activated receptor γ (PPARγ), a nuclear receptor regulating lipid and glucose metabolism. The PPARγ agonist rosiglitazone increases insulin sensitivity and is effective against type II diabetes but has severe adverse effects including weight gain. Amorfrutins improve insulin sensitivity and dyslipidemia but do not enhance undesired fat storage. They bear potential as therapeutics or prophylactic dietary supplements. We identified amorfrutin B as a novel partial agonist of PPARγ with a considerably higher affinity than that of previously reported amorfrutins, similar to that of rosiglitazone. Crystal structures reveal the geranyl side chain of amorfrutin B as the cause of its particularly high affinity. Typical for partial agonists, amorfrutins 1, 2, and B bind helix H3 and the β-sheet of PPARγ but not helix H12.

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