3ngb image
Deposition Date 2010-06-11
Release Date 2010-07-07
Last Version Date 2024-11-27
Entry Detail
PDB ID:
3NGB
Title:
Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.68 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Chain IDs:A (auth: G), D (auth: A), G (auth: D), J (auth: I)
Chain Length:353
Number of Molecules:4
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:Antigen binding fragment of heavy chain: Antibody VRC01
Chain IDs:B (auth: H), E (auth: B), H (auth: E), K (auth: J)
Chain Length:224
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antigen binding fragment of light chain: Antibody VRC01
Chain IDs:C (auth: L), F (auth: C), I (auth: F), L (auth: K)
Chain Length:210
Number of Molecules:4
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN J ASN GLYCOSYLATION SITE
Primary Citation
Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01.
Science 329 811 817 (2010)
PMID: 20616231 DOI: 10.1126/science.1192819

Abstact

During HIV-1 infection, antibodies are generated against the region of the viral gp120 envelope glycoprotein that binds CD4, the primary receptor for HIV-1. Among these antibodies, VRC01 achieves broad neutralization of diverse viral strains. We determined the crystal structure of VRC01 in complex with a human immunodeficiency virus HIV-1 gp120 core. VRC01 partially mimics CD4 interaction with gp120. A shift from the CD4-defined orientation, however, focuses VRC01 onto the vulnerable site of initial CD4 attachment, allowing it to overcome the glycan and conformational masking that diminishes the neutralization potency of most CD4-binding-site antibodies. To achieve this recognition, VRC01 contacts gp120 mainly through immunoglobulin V-gene regions substantially altered from their genomic precursors. Partial receptor mimicry and extensive affinity maturation thus facilitate neutralization of HIV-1 by natural human antibodies.

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Primary Citation of related structures