3bpp image
Deposition Date 2007-12-19
Release Date 2008-04-29
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3BPP
Keywords:
Title:
1510-N membrane protease K138A mutant specific for a stomatin homolog from Pyrococcus horikoshii
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.30
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
I 4 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:1510-N membrane protease
Gene (Uniprot):PH1510
Mutations:K138A
Chain IDs:A
Chain Length:230
Number of Molecules:1
Biological Source:Pyrococcus horikoshii
Primary Citation
Novel dimer structure of a membrane-bound protease with a catalytic Ser-Lys dyad and its linkage to stomatin
J.SYNCHROTRON RADIAT. 15 254 257 (2008)
PMID: 18421152 DOI: 10.1107/S0909049507068471

Abstact

Membrane-bound proteases are involved in various regulatory functions. A previous report indicates that the N-terminal region of PH1510 (1510-N) from the hyperthermophilic archaeon Pyrococcus horikoshii is a serine protease with a catalytic Ser-Lys dyad (Ser97 and Lys138), and specifically cleaves the C-terminal hydrophobic region of the p-stomatin PH1511. According to the crystal structure of the wild-type 1510-N in dimeric form, the active site around Ser97 is in a hydrophobic environment suitable for the hydrophobic substrates. This article reports the crystal structure of the K138A mutant of 1510-N at 2.3 A resolution. The determined structure contains one molecule per asymmetric unit, but 1510-N is active in dimeric form. Two possible sets of dimer were found from the symmetry-related molecules. One dimer is almost the same as the wild-type 1510-N. Another dimer is probably in an inactive form. The L2 loop, which is disordered in the wild-type structure, is significantly kinked at around A-138 in the K138A mutant. Thus Lys138 probably has an important role on the conformation of L2.

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