3ZX7 image
Deposition Date 2011-08-08
Release Date 2012-09-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3ZX7
Keywords:
Title:
Complex of lysenin with phosphocholine
Biological Source:
Source Organism:
EISENIA FETIDA (Taxon ID: 6396)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.84 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LYSENIN
Chain IDs:A
Chain Length:309
Number of Molecules:1
Biological Source:EISENIA FETIDA
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structures of Lysenin Reveal a Shared Evolutionary Origin for Pore-Forming Proteins and its Mode of Sphingomyelin Recognition.
Structure 20 1498 ? (2012)
PMID: 22819216 DOI: 10.1016/J.STR.2012.06.011

Abstact

Pore-forming proteins insert from solution into membranes to create lesions, undergoing a structural rearrangement often accompanied by oligomerization. Lysenin, a pore-forming toxin from the earthworm Eisenia fetida, specifically interacts with sphingomyelin (SM) and may confer innate immunity against parasites by attacking their membranes to form pores. SM has important roles in cell membranes and lysenin is a popular SM-labeling reagent. The structure of lysenin suggests common ancestry with other pore-forming proteins from a diverse set of eukaryotes and prokaryotes. The complex with SM shows the mode of its recognition by a protein in which both the phosphocholine headgroup and one acyl tail are specifically bound. Lipid interaction studies and assays using viable target cells confirm the functional reliance of lysenin on this form of SM recognition.

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Primary Citation of related structures