3ZVR image
Deposition Date 2011-07-27
Release Date 2011-09-21
Last Version Date 2023-12-20
Entry Detail
PDB ID:
3ZVR
Keywords:
Title:
Crystal structure of Dynamin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DYNAMIN-1
Gene (Uniprot):Dnm1
Mutations:YES
Chain IDs:A
Chain Length:772
Number of Molecules:1
Biological Source:RATTUS NORVEGICUS
Ligand Molecules
Primary Citation
The Crystal Structure of Dynamin
Nature 477 561 ? (2011)
PMID: 21927001 DOI: 10.1038/NATURE10441

Abstact

Dynamin-related proteins (DRPs) are multi-domain GTPases that function via oligomerization and GTP-dependent conformational changes to play central roles in regulating membrane structure across phylogenetic kingdoms. How DRPs harness self-assembly and GTP-dependent conformational changes to remodel membranes is not understood. Here we present the crystal structure of an assembly-deficient mammalian endocytic DRP, dynamin 1, lacking the proline-rich domain, in its nucleotide-free state. The dynamin 1 monomer is an extended structure with the GTPase domain and bundle signalling element positioned on top of a long helical stalk with the pleckstrin homology domain flexibly attached on its opposing end. Dynamin 1 dimer and higher order dimer multimers form via interfaces located in the stalk. Analysis of these interfaces provides insight into DRP family member specificity and regulation and provides a framework for understanding the biogenesis of higher order DRP structures and the mechanism of DRP-mediated membrane scission events.

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Primary Citation of related structures