3ZTG image
Deposition Date 2011-07-07
Release Date 2011-12-07
Last Version Date 2024-06-19
Entry Detail
PDB ID:
3ZTG
Keywords:
Title:
Solution structure of the RING finger-like domain of Retinoblastoma Binding Protein-6 (RBBP6)
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
400
Conformers Submitted:
32
Selection Criteria:
HADDOCK ENERGY, RAMACHANDRAN QUALITY
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 UBIQUITIN-PROTEIN LIGASE RBBP6
Gene (Uniprot):RBBP6
Chain IDs:A, B
Chain Length:92
Number of Molecules:2
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (Rbbp6) Suggests It Functions as a U-Box
J.Biol.Chem. 287 7146 ? (2012)
PMID: 22130672 DOI: 10.1074/JBC.M110.217059

Abstact

Retinoblastoma-binding protein-6 (RBBP6) plays a facilitating role, through its RING finger-like domain, in the ubiquitination of p53 by Hdm2 that is suggestive of E4-like activity. Although the presence of eight conserved cysteine residues makes it highly probable that the RING finger-like domain coordinates two zinc ions, analysis of the primary sequence suggests an alternative classification as a member of the U-box family, the members of which do not bind zinc ions. We show here that despite binding two zinc ions, the domain adopts a homodimeric structure highly similar to those of a number of U-boxes. Zinc ions could be replaced by cadmium ions without significantly disrupting the structure or the stability of the domain, although the rate of substitution was an order of magnitude slower than any previous measurement, suggesting that the structure is particularly stable, a conclusion supported by the high thermal stability of the domain. A hallmark of U-box-containing proteins is their association with chaperones, with which they cooperate in eliminating irretrievably unfolded proteins by tagging them for degradation by the proteasome. Using a yeast two-hybrid screen, we show that RBBP6 interacts with chaperones Hsp70 and Hsp40 through its N-terminal ubiquitin-like domain. Taken together with the structural similarities to U-box-containing proteins, our data suggest that RBBP6 plays a role in chaperone-mediated ubiquitination and possibly in protein quality control.

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Primary Citation of related structures