3ZO6 image
Deposition Date 2013-02-20
Release Date 2013-05-01
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3ZO6
Keywords:
Title:
Crystal structure of Bacillus pseudofirmus OF4 mutant ATP synthase c12 ring.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.10 Å
R-Value Free:
0.33
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit c
Gene (Uniprot):atpE
Mutagens:YES
Chain IDs:A, B, C, D, E, F, G (auth: H), H (auth: I), I (auth: J), J (auth: K), K (auth: L), L (auth: M)
Chain Length:69
Number of Molecules:12
Biological Source:Bacillus pseudofirmus OF4
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME A MET modified residue
Ligand Molecules
Primary Citation
The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4.
Proc. Natl. Acad. Sci. U.S.A. 110 7874 7879 (2013)
PMID: 23613590 DOI: 10.1073/pnas.1303333110

Abstact

The c-rings of ATP synthases consist of individual c-subunits, all of which harbor a conserved motif of repetitive glycine residues (GxGxGxG) important for tight transmembrane α-helix packing. The c-ring stoichiometry determines the number of ions transferred during enzyme operation and has a direct impact on the ion-to-ATP ratio, a cornerstone parameter of cell bioenergetics. In the extreme alkaliphile Bacillus pseudofirmus OF4, the glycine motif is replaced by AxAxAxA. We performed a structural study on two mutants with alanine-to-glycine changes using atomic force microscopy and X-ray crystallography, and found that mutants form smaller c12 rings compared with the WT c13. The molar growth yields of B. pseudofirmus OF4 cells on malate further revealed that the c12 mutants have a considerably reduced capacity to grow on limiting malate at high pH. Our results demonstrate that the mutant ATP synthases with either c12 or c13 can support ATP synthesis, and also underscore the critical importance of an alanine motif with c13 ring stoichiometry for optimal growth at pH >10. The data indicate a direct connection between the precisely adapted ATP synthase c-ring stoichiometry and its ion-to-ATP ratio on cell physiology, and also demonstrate the bioenergetic challenges and evolutionary adaptation strategies of extremophiles.

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Primary Citation of related structures