3ZO5 image
Deposition Date 2013-02-20
Release Date 2014-01-29
Last Version Date 2023-12-20
Entry Detail
PDB ID:
3ZO5
Title:
Structure of SENP2-Loop1 in complex with preSUMO-2
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
H 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SENTRIN-SPECIFIC PROTEASE 2
Gene (Uniprot):SENP2
Mutagens:YES
Chain IDs:A
Chain Length:238
Number of Molecules:1
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SMALL UBIQUITIN-RELATED MODIFIER 2
Gene (Uniprot):SUMO2
Chain IDs:B
Chain Length:89
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Structural Insights Into the Senp6 Loop1 Structure in Complex with Sumo2.
Protein Sci. 23 433 ? (2014)
PMID: 24424631 DOI: 10.1002/PRO.2425

Abstact

The SENP proteases regulate the SUMO conjugates in the cell by cleaving SUMO from target proteins. SENP6 and SENP7 are the most divergent members of the SENP/ULP protease family in humans by the presence of insertions in their catalytic domains. Loop1 insertion is determinant for the SUMO2/3 activity and specificity on SENP6 and SENP7. To gain structural insights into the role of Loop1, we have designed a chimeric SENP2 with the insertion of Loop1 into its sequence. The structure of SENP2-Loop1 in complex with SUMO2 was solved at 2.15 Å resolution, and reveals the details of an interface exclusive to SENP6/7 and the formation of unique contacts between both proteins. Interestingly, functional data with SUMO substrates showed an increase of the proteolytic activity in the SENP2-Loop1 chimera for diSUMO2 and polySUMO2 substrates.

Legend

Protein

Chemical

Disease

Primary Citation of related structures