3ZO4 image
Deposition Date 2013-02-20
Release Date 2013-03-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3ZO4
Title:
The Synthesis and Evaluation of Diazaspirocyclic Protein Kinase Inhibitors
Biological Source:
Source Organism:
BOS TAURUS (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA
Gene (Uniprot):PRKACA
Chain IDs:A
Chain Length:351
Number of Molecules:1
Biological Source:BOS TAURUS
Polymer Type:polypeptide(L)
Molecule:CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA
Gene (Uniprot):PKIA
Chain IDs:B (auth: I)
Chain Length:20
Number of Molecules:1
Biological Source:BOS TAURUS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP A SER PHOSPHOSERINE
TPO A THR PHOSPHOTHREONINE
Primary Citation
Synthesis and evaluation of heteroaryl substituted diazaspirocycles as scaffolds to probe the ATP-binding site of protein kinases.
Bioorg. Med. Chem. 21 5707 5724 (2013)
PMID: 23920481 DOI: 10.1016/j.bmc.2013.07.021

Abstact

With the success of protein kinase inhibitors as drugs to target cancer, there is a continued need for new kinase inhibitor scaffolds. We have investigated the synthesis and kinase inhibition of new heteroaryl-substituted diazaspirocyclic compounds that mimic ATP. Versatile syntheses of substituted diazaspirocycles through ring-closing metathesis were demonstrated. Diazaspirocycles directly linked to heteroaromatic hinge binder groups provided ligand efficient inhibitors of multiple kinases, suitable as starting points for further optimization. The binding modes of representative diazaspirocyclic motifs were confirmed by protein crystallography. Selectivity profiles were influenced by the hinge binder group and the interactions of basic nitrogen atoms in the scaffold with acidic side-chains of residues in the ATP pocket. The introduction of more complex substitution to the diazaspirocycles increased potency and varied the selectivity profiles of these initial hits through engagement of the P-loop and changes to the spirocycle conformation, demonstrating the potential of these core scaffolds for future application to kinase inhibitor discovery.

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Primary Citation of related structures