3ZNI image
Deposition Date 2013-02-14
Release Date 2013-07-10
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3ZNI
Keywords:
Title:
Structure of phosphoTyr363-Cbl-b - UbcH5B-Ub - ZAP-70 peptide complex
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.21 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 UBIQUITIN-PROTEIN LIGASE CBL-B
Gene (Uniprot):CBLB
Mutagens:YES
Chain IDs:A, E, I, M
Chain Length:394
Number of Molecules:4
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TYROSINE-PROTEIN KINASE ZAP-70
Gene (Uniprot):ZAP70
Chain IDs:B, F, J, N
Chain Length:12
Number of Molecules:4
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UBIQUITIN-CONJUGATING ENZYME E2 D2
Gene (Uniprot):UBE2D2
Mutagens:YES
Chain IDs:C, G, K, O
Chain Length:146
Number of Molecules:4
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:POLYUBIQUITIN-C
Gene (Uniprot):UBC
Chain IDs:D, H, L, P
Chain Length:81
Number of Molecules:4
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PTR A TYR O-PHOSPHOTYROSINE
Primary Citation
Essentiality of a Non-Ring Element in Priming Donor Ubiquitin for Catalysis by a Monomeric E3.
Nat.Struct.Mol.Biol. 20 982 ? (2013)
PMID: 23851457 DOI: 10.1038/NSMB.2621

Abstact

RING E3 ligases catalyze the transfer of ubiquitin (Ub) from E2 ubiquitin-conjugating enzyme thioesterified with Ub (E2~Ub) to substrate. For RING E3 dimers, the RING domain of one subunit and tail of the second cooperate to prime Ub, but how this is accomplished by monomeric RING E3s in the absence of a tail-like component is currently unknown. Here, we present a crystal structure of a monomeric RING E3, Tyr363-phosphorylated human CBL-B, bound to a stabilized Ub-linked E2, revealing a similar mechanism in activating E2~Ub. Both pTyr363 and the pTyr363-induced element interact directly with Ub's Ile36 surface, improving the catalytic efficiency of Ub transfer by ~200-fold. Hence, interactions outside the canonical RING domain are crucial for optimizing Ub transfer in both monomeric and dimeric RING E3s. We propose that an additional non-RING Ub-priming element may be a common RING E3 feature.

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Primary Citation of related structures
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