3ZJC image
Deposition Date 2013-01-17
Release Date 2013-03-13
Last Version Date 2023-12-20
Entry Detail
PDB ID:
3ZJC
Keywords:
Title:
Crystal structure of GMPPNP-bound human GIMAP7 L100Q variant
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.15 Å
R-Value Free:
0.30
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GTPASE IMAP FAMILY MEMBER 7
Gene (Uniprot):GIMAP7
Mutagens:YES
Chain IDs:A, B, C, D, E, F
Chain Length:305
Number of Molecules:6
Biological Source:HOMO SAPIENS
Primary Citation
Structural Insights Into the Mechanism of Gtpase Activation in the Gimap Family.
Structure 21 550 ? (2013)
PMID: 23454188 DOI: 10.1016/J.STR.2013.01.014

Abstact

GTPases of immunity-associated proteins (GIMAPs) are regulators of lymphocyte survival and homeostasis. We previously determined the structural basis of GTP-dependent GIMAP2 scaffold formation on lipid droplets. To understand how its GTP hydrolysis is activated, we screened for other GIMAPs on lipid droplets and identified GIMAP7. In contrast to GIMAP2, GIMAP7 displayed dimerization-stimulated GTP hydrolysis. The crystal structure of GTP-bound GIMAP7 showed a homodimer that assembled via the G domains, with the helical extensions protruding in opposite directions. We identified a catalytic arginine that is supplied to the opposing monomer to stimulate GTP hydrolysis. GIMAP7 also stimulated GTP hydrolysis by GIMAP2 via an analogous mechanism. Finally, we found GIMAP2 and GIMAP7 expression differentially regulated in several human T cell lymphoma lines. Our findings suggest that GTPase activity in the GIMAP family is controlled by homo- and heterodimerization. This may have implications for the differential roles of some GIMAPs in lymphocyte survival.

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