3ZIZ image
Deposition Date 2013-01-15
Release Date 2013-04-17
Last Version Date 2024-11-13
Entry Detail
PDB ID:
3ZIZ
Keywords:
Title:
Crystal structure of Podospora anserina GH5 beta-(1,4)-mannanase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GH5 ENDO-BETA-1,4-MANNANASE
Chain IDs:A
Chain Length:382
Number of Molecules:1
Biological Source:PODOSPORA ANSERINA
Primary Citation
Structural and Biochemical Analyses of Glycoside Hydrolase Families 5 and 26 Beta-(1,4)-Mannanases from Podospora Anserina Reveal Differences Upon Manno-Oligosaccharides Catalysis.
J.Biol.Chem. 288 14624 ? (2013)
PMID: 23558681 DOI: 10.1074/JBC.M113.459438

Abstact

The microbial deconstruction of the plant cell wall is a key biological process that is of increasing importance with the development of a sustainable biofuel industry. The glycoside hydrolase families GH5 (PaMan5A) and GH26 (PaMan26A) endo-β-1,4-mannanases from the coprophilic ascomycete Podospora anserina contribute to the enzymatic degradation of lignocellulosic biomass. In this study, P. anserina mannanases were further subjected to detailed comparative analysis of their substrate specificities, active site organization, and transglycosylation capacity. Although PaMan5A displays a classical mode of action, PaMan26A revealed an atypical hydrolysis pattern with the release of mannotetraose and mannose from mannopentaose resulting from a predominant binding mode involving the -4 subsite. The crystal structures of PaMan5A and PaMan26A were solved at 1.4 and 2.85 Å resolution, respectively. Analysis of the PaMan26A structure supported strong interaction with substrate at the -4 subsite mediated by two aromatic residues Trp-244 and Trp-245. The PaMan26A structure appended to its family 35 carbohydrate binding module revealed a short and proline-rich rigid linker that anchored together the catalytic and the binding modules.

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