3ZHF image
Deposition Date 2012-12-21
Release Date 2013-07-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3ZHF
Title:
gamma 2 adaptin EAR domain crystal structure with preS1 site1 peptide NPDWDFN
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
HEPATITIS B VIRUS (Taxon ID: 10407)
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2
Gene (Uniprot):AP1G2
Chain IDs:A
Chain Length:124
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:LARGE ENVELOPE PROTEIN
Gene (Uniprot):S
Chain IDs:B
Chain Length:9
Number of Molecules:1
Biological Source:HEPATITIS B VIRUS
Primary Citation
The Hepatitis B Virus Pres1 Domain Hijacks Host Trafficking Proteins by Motif Mimicry.
Nat.Chem.Biol. 9 540 ? (2013)
PMID: 23851574 DOI: 10.1038/NCHEMBIO.1294

Abstact

Hepatitis B virus (HBV) is an infectious, potentially lethal human pathogen. However, there are no effective therapies for chronic HBV infections. Antiviral development is hampered by the lack of high-resolution structures for essential HBV protein-protein interactions. The interaction between preS1, an HBV surface-protein domain, and its human binding partner, γ2-adaptin, subverts the membrane-trafficking apparatus to mediate virion export. This interaction is a putative drug target. We report here atomic-resolution descriptions of the binding thermodynamics and structural biology of the interaction between preS1 and the EAR domain of γ2-adaptin. NMR, protein engineering, X-ray crystallography and MS showed that preS1 contains multiple γ2-EAR-binding motifs that mimic the membrane-trafficking motifs (and binding modes) of host proteins. These motifs localize together to a relatively rigid, functionally important region of preS1, an intrinsically disordered protein. The preS1-γ2-EAR interaction was relatively weak and efficiently outcompeted by a synthetic peptide. Our data provide the structural road map for developing peptidomimetic antivirals targeting the γ2-EAR-preS1 interaction.

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