ISDA

Entry Detail

PDB ID:

3ZGL

Keywords:

Title:

Crystal structures of Escherichia coli IspH in complex with AMBPP a potent inhibitor of the methylerythritol phosphate pathway

Biological Source:

Source Organism:

ESCHERICHIA COLI

Host Organism:

ESCHERICHIA COLI M15

PDB Version:

Deposition Date:

2012-12-18

Release Date:

2013-01-09

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.68 Å

R-Value Free:

0.24

R-Value Work:

0.18

R-Value Observed:

0.19

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE
Chain IDs:A, B
Chain Length:332
Number of Molecules:2
Biological Source:ESCHERICHIA COLI

UniProt ID:P62623 Pfam ID:PF02401

Ligand Molecules

10E

SF4

Primary Citation

Further Insight into Crystal Structures of Escherichia coli IspH/LytB in Complex with Two Potent Inhibitors of the MEP Pathway: A Starting Point for Rational Design of New Antimicrobials.

Borel, F, Barbier, E, Krasutsky, S, Janthawornpong, K, Chaignon, P, Poulter, C.D, Ferrer, J.L, Seemann, M.Show

Chembiochem 18 2137 2144 (2017)

PMID: 28862365 DOI: 10.1002/cbic.201700363

Abstact

IspH, also called LytB, a protein involved in the biosynthesis of isoprenoids through the methylerythritol phosphate pathway, is an attractive target for the development of new antimicrobial drugs. Here, we report crystal structures of Escherichia coli IspH in complex with the two most potent inhibitors: (E)-4-mercapto-3-methylbut-2-en-1-yl diphosphate (TMBPP) and (E)-4-amino-3-methylbut-2-en-1-yl diphosphate (AMBPP) at 1.95 and 1.7 Å resolution, respectively. The structure of the E. coli IspH:TMBPP complex exhibited two conformers of the inhibitor. This unexpected feature was exploited to design and evolve new antimicrobial candidates in silico.

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Primary Citation of related structures